(spring semester 2020/21)
Contact: Mikołaj Buchwald, e-mail: mikolaj [dot] buchwald [at] amu [dot] edu [dot] pl
On-call time for students (remotely): Wednesday, 9am-10am
Classes — literature
- Introduction
- Glasser, M. F., Smith, S. M., Marcus, D. S., Andersson, J. L., Auerbach, E. J., Behrens, T. E., … & Robinson, E. C. (2016). The human connectome project’s neuroimaging approach. Nature neuroscience, 19(9), 1175.
- Lebedev, M. A., & Nicolelis, M. A. (2017). Brain-machine interfaces: From basic science to neuroprostheses and neurorehabilitation. Physiological reviews, 97(2), 767-837.
- (Additional literature) Page, M. P. (2006). What can’t functional neuroimaging tell the cognitive psychologist? Cortex, 42(3), 428-443.
- Pure vs. applied science
- (Additional resources) Sapolsky, R. (2010) 6. Behavioral Genetics I — a lecture at Stanford University. https://www.youtube.com/watch?v=e0WZx7lUOrY&t — HCP collected brain neuroimaging, as well as genomic data from monozygotic twins.
- Addiction
- Deroche-Gamonet, V., Belin, D., & Piazza, P. V. (2004). Evidence for addiction-like behavior in the rat. Science, 305(5686), 1014-1017.
- (Additional literature) Volkow, N. D., Koob, G. F., & McLellan, A. T. (2016). Neurobiologic Advances from the Brain Disease Model of Addiction. New England Journal of Medicine, 374(4), 363–371. http://doi.org/10.1056/nejmra1511480
- (Additional literature) Volkow, N. D., Wang, G.-J., Telang, F., Fowler, J. S., Logan, J., Childress, A.-R., … Christopher, W. (2006). Cocaine Cues and Dopamine in Dorsal Striatum: Mechanism of Craving in Cocaine Addiction. Journal of Neuroscience, 26(24), 6583–6588. http://doi.org/10.1523/jneurosci.1544-06.2006
- Binge
- Avena, N. M., Rada, P., Moise, N., & Hoebel, B. G. (2006). Sucrose sham feeding on a binge schedule releases accumbens dopamine repeatedly and eliminates the acetylcholine satiety response. Neuroscience, 139(3), 813-820.
- Sleep
- Aeschbach, D., Cutler, A. J., & Ronda, J. M. (2008). A role for non-rapid-eye-movement sleep homeostasis in perceptual learning. The Journal of Neuroscience, 28(11), 2766-2772.
- (Additional literature) Pereira, S. I. R., Beijamini, F., Vincenzi, R. A., & Louzada, F. M. (2015). Re-examining sleep’s effect on motor skills: How to access performance on the finger tapping task? Sleep Science, 8(1), 4–8. https://doi.org/10.1016/j.slsci.2015.01.001
- (Additional literature) Borragán, G., Urbain, C., Schmitz, R., Mary, A., & Peigneux, P. (2015). Sleep and memory consolidation: Motor performance and proactive interference effects in sequence learning. Brain and Cognition, 95, 54–61. https://doi.org/10.1016/j.bandc.2015.01.011
- Learning and memory
- Knowlton, B. J., Ramus, S. J., & Squire, L. R. (1992). Intact artificial grammar learning in amnesia: Dissociation of classification learning and explicit memory for specific instances. Psychological Science, 3(3), 172-179.
- Scientific reliability/validity: Scopus (Scimago) and Web of Science
- Knowlton, B. J., Ramus, S. J., & Squire, L. R. (1992). Intact artificial grammar learning in amnesia: Dissociation of classification learning and explicit memory for specific instances. Psychological Science, 3(3), 172-179.
- Cognitive control
- Anguera, J. A., Boccanfuso, J., Rintoul, J. L., Al-Hashimi, O., Faraji, F., Janowich, J., Kong, E., Larraburo, Y., Rolle, C., Johnston, E., & Gazzaley, A. (2013). Video game training enhances cognitive control in older adults. Nature, 501(7465), 97-101
- Scientific programming: Python and R
- Anguera, J. A., Boccanfuso, J., Rintoul, J. L., Al-Hashimi, O., Faraji, F., Janowich, J., Kong, E., Larraburo, Y., Rolle, C., Johnston, E., & Gazzaley, A. (2013). Video game training enhances cognitive control in older adults. Nature, 501(7465), 97-101
- Action control
- Króliczak, G., McAdam, T. D., Quinlan, D. J., & Culham, J. C. (2008). The human dorsal stream adapts to real actions and 3D shape processing: a functional magnetic resonance imaging study. Journal of neurophysiology, 100(5), 2627-2639.
- (Additional literature) Norman, K. A., Polyn, S. M., Detre, G. J., & Haxby, J. V. (2006). Beyond mind-reading: multi-voxel pattern analysis of fMRI data. Trends in Cognitive Sciences, 10(9), 424–430. https://doi.org/10.1016/j.tics.2006.07.005
- (Additional literature) Valyear, K. F., & Frey, S. H. (2015). Human posterior parietal cortex mediates hand-specific planning. NeuroImage, 114, 226–238. https://doi.org/10.1016/j.neuroimage.2015.03.058
- Python environments: Atom, JupyterLab, PyCharm
- Spatial orientation
- Morris, R. G. M., Garrud, P., Rawlins, J. N. P., & O’Keefe, J. (1982). Place navigation impaired in rats with hippocampal lesions. Nature, 297(5868), 681–683.
- Pure science or rat medicine?
- Morris, R. G. M., Garrud, P., Rawlins, J. N. P., & O’Keefe, J. (1982). Place navigation impaired in rats with hippocampal lesions. Nature, 297(5868), 681–683.
- Function lateralization
- Verma, A., Van der Haegen, L., & Brysbaert, M. (2013). Symmetry detection in typically and atypically speech lateralized individuals: A visual half-field study. Neuropsychologia, 51(13), 2611-2619.
- Neural plasticity
- Siuda-Krzywicka, K., Bola, Ł., Paplińska, M., Sumera, E., Jednoróg, K., Marchewka, A., Śliwińska, M., Amedi, A., Szwed, M. (2016) Massive cortical reorganization in sighted Braille readers. eLife, 5, e10762.
- Explanation vs. verification
- Siuda-Krzywicka, K., Bola, Ł., Paplińska, M., Sumera, E., Jednoróg, K., Marchewka, A., Śliwińska, M., Amedi, A., Szwed, M. (2016) Massive cortical reorganization in sighted Braille readers. eLife, 5, e10762.
- Psychological disorders
- Holmes, A. J., & Pizzagalli, D. A. (2008). Spatiotemporal dynamics of error processing dysfunctions in major depressive disorder. Archives of General Psychiatry, 65(2), 179-188.
- Useful information: computer hardware and operating systems (Black-box insides, dual-booting, Mac OSX vs. Linux, etc.)
- Holmes, A. J., & Pizzagalli, D. A. (2008). Spatiotemporal dynamics of error processing dysfunctions in major depressive disorder. Archives of General Psychiatry, 65(2), 179-188.
- Love and desire
- Lester, G. L., & Gorzalka, B. B. (1988). Effect of novel and familiar mating partners on the duration of sexual receptivity in the female hamster. Behavioral and neural biology, 49(3), 398-405.
- Bartels, A., & Zeki, S. (2004). The neural correlates of maternal and romantic love. Neuroimage, 21(3), 1155-1166.
- Predatory journals
- Writing a peer-review
- Part of course requirements
- Write a peer-review of the study proposal according to guidelines from this page.
- Cultural mind
- Abboud, S., Maidenbaum, S., Dehaene, S., & Amedi, A. (2015). A number-form area in the blind. Nature communications, 6.
Additional requirements for the course ¶
- Present a scientific paper (groups of 2).
- Design your own experiment utilizing approaches from behavioral and/or cognitive neuroscience (individually):
- abstract, 4 sentences:
- what is the problem,
- what was being said about the problem,
- how do you approach the problem,
- what the results will tell about the problem;
- describe literature background of the study;
- state your research question and hypothesis;
- present experimental paradigm (preferably as a figure);
- describe data analysis methods (e.g., statistical tests you intend to use);
- citations and bibliography should be formatted according to the APA guidelines;
- all of this should close in 4 A4 pages, remember:
- about title page/title-author-date-subject information,
- to include at least one figure/scheme/table,
- to include APA-style bibliography;
- present and discuss your idea during classes.
- abstract, 4 sentences: